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Merge upstream changes. #1

Merged
merged 44 commits into from
May 5, 2020
Merged

Merge upstream changes. #1

merged 44 commits into from
May 5, 2020

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aterenin
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@aterenin aterenin commented May 5, 2020

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kshyatt and others added 30 commits February 24, 2020 11:17
@kshyatt
Actually test error throwing for lsvqr
1a4b08f
@janEbert
Implement nnz, nonzeros and nonzeroinds
31560da 
This also fixes `show` for sparse GPU vectors.
@janEbert
Test nnz, nonzeros and nonzeroinds
22c9ec5
@janEbert
Implement getindex
9fb78a8 
This also fixes `show` for sparse GPU matrices.
@github-actions
Update dependencies.
3399eb2 
Project CuArrays v2.0.1
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.2
  [be33ccc6]   CUDAnative v3.0.2
  [864edb3b] ↑ DataStructures v0.17.10 ⇒ v0.17.11
  [0c68f7d7]   GPUArrays v3.1.0 #cb79e08 (https://github.com/JuliaGPU/GPUArrays.jl.git)
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9]   TimerOutputs v0.5.3
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
@kshyatt
Allow scalar indexing where necessary and add a few tests
15bd2ae
@maleadt
Merge pull request #674 from JuliaGPU/update_manifest
06a1406 
Update manifest
@kshyatt
Fix scalar indexing
3268f62
@kshyatt
use the allowscalar macro
3f2ce5b
@bors @kshyatt
Merge #675
cc785c4 
675: Allow scalar indexing where necessary and add a few tests r=maleadt a=kshyatt



Co-authored-by: Katharine Hyatt <khyatt@flatironinstitute.org>
@github-actions
Update dependencies.
9c41765 
Project CuArrays v2.0.1
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.2
  [be33ccc6] ↑ CUDAnative v3.0.2 ⇒ v3.0.4
  [864edb3b] ↑ DataStructures v0.17.11 ⇒ v0.17.12
  [0c68f7d7]   GPUArrays v3.1.0 #cb79e08 (https://github.com/JuliaGPU/GPUArrays.jl.git)
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9]   TimerOutputs v0.5.3
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
@maleadt
Merge pull request #681 from JuliaGPU/update_manifest
4c6bb75 
Update manifest
@bors @kshyatt
Merge #604
a1a4dc0 
604: Actually test error throwing for lsvqr r=maleadt a=kshyatt

Can't test mismatched dimensions if the GPU doesn't know about them

Co-authored-by: Katharine Hyatt <khyatt@flatironinstitute.org>
@matsueushi
Wrapper functions for NNlib (#615)
aeba8c9
@github-actions
Update dependencies.
24c6d47 
Project CuArrays v2.0.1
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.2
  [be33ccc6]   CUDAnative v3.0.4
  [864edb3b] ↑ DataStructures v0.17.12 ⇒ v0.17.13
  [0c68f7d7]   GPUArrays v3.1.0 #cb79e08 (https://github.com/JuliaGPU/GPUArrays.jl.git)
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9] ↑ TimerOutputs v0.5.3 ⇒ v0.5.4
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
@maleadt
Merge pull request #686 from JuliaGPU/update_manifest
5737865 
Update manifest
@maleadt
Bump version
c38da71
@AStupidBear
fix 1d convolution
67e322b
@janEbert
Test getindex
8acbd05
@AStupidBear
add comment to fix1d
4783f83
@maleadt
Disable the GC after taking pool-related spinlocks.
df0dc90
@maleadt
Merge pull request #690 from AStupidBear/conv1d
e6b5376 
fix 1d convolution
@maleadt
Merge pull request #572 from janEbert/sparse
c8d9a9b 
Implement a few sparse array basics
@maleadt
Use released GPUArrays.
92082a5
@maleadt
Only disable finalizers, not the entire GC.
2d99e03
@maleadt
Enable finalizers only after releasing the lock.
6b1bc0d
@maleadt @vchuravy
Update src/memory.jl
a145023 
Co-Authored-By: Valentin Churavy <vchuravy@users.noreply.github.com>
@amontoison
Fix sparse mul!
f380ccd
@amontoison
Improve mul! testset names
c0a73bc
@amontoison
Fix A' * x products for complex CuSparseMatrixCSC
2ec414f
github-actions bot and others added 14 commits April 27, 2020 00:09
@github-actions
Update dependencies.
8a4eee8 
Project CuArrays v2.1.0
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814] ↑ CUDAdrv v6.2.2 ⇒ v6.2.3
  [be33ccc6]   CUDAnative v3.0.4
  [864edb3b]   DataStructures v0.17.13
  [0c68f7d7]   GPUArrays v3.2.0
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9] ↑ TimerOutputs v0.5.4 ⇒ v0.5.5
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
@maleadt
Merge pull request #694 from JuliaGPU/update_manifest
ee16e77 
Update manifest
@bors @amontoison
Merge #692
16c0080 
692: Fix sparse mul! r=amontoison a=amontoison

close #629 
#630 , #637 
@haampie 

Co-authored-by: Alexis Montoison <alexis.montoison@polymtl.ca>
@electronsandstuff
adds wrappers for syevjBatched/heevjBatched family of CUSOLVER functions
5970046
@maleadt
Merge pull request #693 from JuliaGPU/tb/disable_gc
2258a24 
Disable the GC after taking pool-related spinlocks.
@maleadt
Merge pull request #695 from electronsandstuff/electronsandstuff/syev…
1cab188 
…jBatched

adds wrappers for syevjBatched/heevjBatched family of CUSOLVER functions
@maleadt
Don't require capability 7.5 for testing.
4689060
@github-actions
Update dependencies.
5e081f5 
Project CuArrays v2.1.0
    Status `~/work/CuArrays.jl/CuArrays.jl/Project.toml`
  [621f4979]   AbstractFFTs v0.5.0
  [79e6a3ab]   Adapt v1.0.1
  [fa961155]   CEnum v0.2.0
  [3895d2a7]   CUDAapi v4.0.0
  [c5f51814]   CUDAdrv v6.2.3
  [be33ccc6]   CUDAnative v3.0.4
  [864edb3b] ↑ DataStructures v0.17.13 ⇒ v0.17.15
  [0c68f7d7]   GPUArrays v3.2.0
  [1914dd2f]   MacroTools v0.5.5
  [872c559c]   NNlib v0.6.6
  [189a3867]   Reexport v0.2.0
  [ae029012]   Requires v1.0.1
  [a759f4b9]   TimerOutputs v0.5.5
  [8f399da3]   Libdl
  [37e2e46d]   LinearAlgebra
  [44cfe95a]   Pkg
  [de0858da]   Printf
  [9a3f8284]   Random
  [2f01184e]   SparseArrays
  [10745b16]   Statistics
@maleadt
Merge pull request #702 from JuliaGPU/update_manifest
d06fea8 
Update manifest
@maleadt
Repopulate the pool from freed blocks before allocating.
b4ef93d
@maleadt
Add missing lock.
31916fb
@maleadt
Merge pull request #704 from JuliaGPU/tb/binned_repopulate
f44cf19 
Repopulate the pool from freed blocks before allocating.
@maleadt
CEnum 0.3 compatibility.
4742b8a
@maleadt
Merge pull request #705 from JuliaGPU/tb/cenum
eac33f8 
CEnum 0.3 compatibility.
@aterenin aterenin merged commit 9b2ec43 into aterenin:master May 5, 2020
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9 participants
@aterenin @maleadt @JuliaRegistrator @kshyatt @janEbert @matsueushi @AStupidBear @amontoison @electronsandstuff